Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | Z _ _mapper (sekupy.preprocessing.base.Transformer attribute) A AbsoluteValueTransformer (class in sekupy.preprocessing.math) add() (sekupy.preprocessing.base.PreprocessingPipeline method) add_attributes() (in module sekupy.io.base) add_bids_attributes() (in module sekupy.io.bids) add_events() (in module sekupy.io.base) add_filename() (in module sekupy.io.base) add_labels() (in module sekupy.io.connectivity) add_subdirs() (in module sekupy.utils.files) add_subjectname() (in module sekupy.io.subjects) afni_converter() (in module sekupy.utils.image) aggregate_searchlight() (in module sekupy.results.base) AnalysisIterator (class in sekupy.analysis.iterator) AnalysisPipeline (class in sekupy.analysis.pipeline) Analyzer (class in sekupy.analysis.base) apply_function() (in module sekupy.results.dataframe) array2df() (in module sekupy.results.dataframe) array_to_matrix() (in module sekupy.utils.matrix) AutoRegressiveModel (class in sekupy.simulation.autoregressive) AverageEstimator (class in sekupy.preprocessing.connectivity) B Balancer (class in sekupy.preprocessing.balancing.base) barplot_nodes() (in module sekupy.plot.nodes) BehaviouralFingerprint (class in sekupy.analysis.fingerprint.fingerprint) bgss() (in module sekupy.analysis.states.metrics) build_pathnames() (in module sekupy.utils.files) ButterFilter (class in sekupy.preprocessing.filter) C calculate_centroids() (in module sekupy.results.simulations) calculate_metrics() (in module sekupy.results.simulations) ch_criterion() (in module sekupy.analysis.states.metrics) check_configuration() (in module sekupy.io.configuration) check_proximity() (in module sekupy.ext.nilearn.utils) chunk_generator() (in module sekupy.preprocessing.balancing.utils) clean_dataframe() (in module sekupy.results.dataframe) Clustering (class in sekupy.analysis.states.base) conf_to_json() (in module sekupy.io.configuration) conjunction_map() (in module sekupy.utils.image) conn_transformer() (in module sekupy.io.connectivity) Connectivity (class in sekupy.analysis.connectivity.base) ConnectivityStateSimulator (class in sekupy.simulation.connectivity) convert_fields() (in module sekupy.results.simulations) copy_matrix() (in module sekupy.utils.matrix) cross_validation_index() (in module sekupy.analysis.states.metrics) CrossDecoding (class in sekupy.analysis.decoding.cross_decoding) cutoff() (in module sekupy.ext.sklearn.cluster) D dataframe_dummy_columns() (in module sekupy.results.dataframe) dataframe_slicer() (in module sekupy.results.dataframe) dataframe_to_afni() (in module sekupy.results.base) DataLoader (class in sekupy.io.loader) dataset_wizard() (in module sekupy.io) DatasetFxNormalizer (class in sekupy.preprocessing.normalizers) DatasetMasker (class in sekupy.preprocessing.slicers) Decoding (class in sekupy.analysis.decoding), [1] default_generator() (in module sekupy.preprocessing.balancing.utils) degree() (in module sekupy.analysis.connectivity.topology) DelayedModel (class in sekupy.simulation.autoregressive) Detrender (class in sekupy.preprocessing.functions) dict_to_fname() (in module sekupy.utils.bids) dot_correlation() (in module sekupy.utils.math) ds_to_dataframe() (in module sekupy.utils.dataset) dynamics_errors() (in module sekupy.results.simulations) E edit_attr() (in module sekupy.io.connectivity) enable_logging() (in module sekupy.utils) event_generator() (in module sekupy.preprocessing.balancing.utils) explained_variance() (in module sekupy.analysis.states.metrics) F FeatureAttrNormalizer (class in sekupy.preprocessing.normalizers) FeatureExpressionSlicer (class in sekupy.preprocessing.slicers) FeatureResidualTransformer (class in sekupy.preprocessing.regression) FeatureSigmaNormalizer (class in sekupy.preprocessing.normalizers) FeatureSlicer (class in sekupy.preprocessing.slicers) FeatureStacker (class in sekupy.preprocessing.functions) FeatureZNormalizer (class in sekupy.preprocessing.normalizers) fetch() (sekupy.io.loader.DataLoader method) (sekupy.simulation.loader.SimulationLoader method) filter_bids() (in module sekupy.utils.bids) filter_dataframe() (in module sekupy.results.base) filter_files() (in module sekupy.utils.bids) find_best_k() (in module sekupy.results.simulations) find_directory() (in module sekupy.utils.bids) find_roi() (in module sekupy.io.base) find_roi_center() (in module sekupy.utils.atlas) fit() (sekupy.analysis.base.Analyzer method) (sekupy.analysis.connectivity.base.Connectivity method) (sekupy.analysis.decoding.cross_decoding.CrossDecoding method) (sekupy.analysis.decoding.Decoding method) (sekupy.analysis.decoding.roi_decoding.RoiDecoding method), [1] (sekupy.analysis.decoding.temporal_decoding.TemporalDecoding method), [1] (sekupy.analysis.fingerprint.fingerprint.BehaviouralFingerprint method) (sekupy.analysis.fingerprint.fingerprint.Identifiability method) (sekupy.analysis.linear_model.LinearModel method) (sekupy.analysis.pipeline.AnalysisPipeline method) (sekupy.analysis.rsa.rsa.RSA method) (sekupy.analysis.states.base.Clustering method) (sekupy.analysis.states.gsbs.GSBS method) (sekupy.analysis.states.subsamplers.SpeedSubsampler method) (sekupy.ext.sklearn.cluster.PeakDensityClustering method) (sekupy.simulation.autoregressive.AutoRegressiveModel method) (sekupy.simulation.autoregressive.DelayedModel method) (sekupy.simulation.autoregressive.SimulationModel method) (sekupy.simulation.connectivity.ConnectivityStateSimulator method) flatten_matrix() (in module sekupy.utils.matrix) function_mapper() (in module sekupy.preprocessing.mapper) G gap() (in module sekupy.analysis.states.metrics) gaussian_kernel() (in module sekupy.ext.sklearn.cluster) generate_duration() (sekupy.simulation.connectivity.ConnectivityStateSimulator method) get_aal_coords() (in module sekupy.utils.atlas) get_aalmeg_info() (in module sekupy.utils.atlas) get_atlas90_info() (in module sekupy.utils.atlas) get_atlas_info() (in module sekupy.utils.atlas) get_bids_kwargs() (in module sekupy.io.bids) get_brightness() (in module sekupy.plot.nodes) get_centers() (in module sekupy.analysis.states.metrics) get_centroids() (sekupy.analysis.states.base.Clustering method) get_circle_vert() (in module sekupy.plot.connectivity) get_configuration_fields() (in module sekupy.results.base) get_connectivity_results() (in module sekupy.results.base) get_dictionary() (in module sekupy.utils.bids) get_ds_data() (in module sekupy.utils.dataset) get_eeg_channels() (in module sekupy.utils.atlas) get_extrema_histogram() (in module sekupy.analysis.states.base) get_findlab_coords() (in module sekupy.utils.atlas) get_findlab_info() (in module sekupy.utils.atlas) get_id() (in module sekupy.utils) get_k() (in module sekupy.analysis.states.metrics) get_linear_vert() (in module sekupy.plot.connectivity) get_loader() (in module sekupy.io.loader) get_multi_vert() (in module sekupy.plot.connectivity) get_painter_palette() (in module sekupy.plot.palette) get_params() (in module sekupy.analysis.utils) get_permutation_values() (in module sekupy.results.base) (in module sekupy.results.bids) get_ratio() (sekupy.preprocessing.balancing.imbalancer.Imbalancer method) get_results() (in module sekupy.results.base) (in module sekupy.results.simulations) get_results_bids() (in module sekupy.results.bids) get_rois() (in module sekupy.analysis.utils) get_rois_names() (in module sekupy.utils.atlas) get_searchlight_results() (in module sekupy.results.base) get_searchlight_results_bids() (in module sekupy.results.bids) get_state_duration() (sekupy.analysis.states.base.Clustering method) get_state_frequencies() (sekupy.analysis.states.base.Clustering method) get_subjects() (sekupy.io.loader.DataLoader method) get_time() (in module sekupy.utils.time) get_transition_matrix() (sekupy.analysis.states.base.Clustering method) get_triu_array_index() (in module sekupy.analysis.states.metrics) get_values() (in module sekupy.results.base) (in module sekupy.results.simulations) get_values_bids() (in module sekupy.results.bids) get_viviana_info() (in module sekupy.utils.atlas) get_weights() (in module sekupy.results.dataframe) get_wes_palette() (in module sekupy.plot.palette) global_explained_variance() (in module sekupy.analysis.states.metrics) greater_equal() (in module sekupy.analysis.states.subsamplers) GSBS (class in sekupy.analysis.states.gsbs) H hex_to_rgb() (in module sekupy.plot.palette) I id (sekupy.analysis.base.Analyzer attribute) Identifiability (class in sekupy.analysis.fingerprint.fingerprint) Imbalancer (class in sekupy.preprocessing.balancing.imbalancer) index_i() (in module sekupy.analysis.states.metrics) K kl_criterion() (in module sekupy.analysis.states.metrics) L less_equal() (in module sekupy.analysis.states.subsamplers) LinearModel (class in sekupy.analysis.linear_model) load_attributes() (in module sekupy.io.base) load_bids_attributes() (in module sekupy.io.bids) load_bids_dataset() (in module sekupy.io.bids) load_bids_mambo_dataset() (in module sekupy.io.mambo) load_bids_mask() (in module sekupy.io.bids) load_dataset() (in module sekupy.io.base) load_ds() (in module sekupy.io) load_filelist() (in module sekupy.io.base) load_fmri() (in module sekupy.io.base) load_hcp_motor() (in module sekupy.io.mambo) load_mask() (in module sekupy.io.base) load_mat_data() (in module sekupy.io.connectivity) load_mat_ds() (in module sekupy.io.connectivity) load_proximity() (in module sekupy.ext.nilearn.utils) load_reftep_iplv() (in module sekupy.io.mambo) load_reftep_power() (in module sekupy.io.mambo) load_reftep_sensor() (in module sekupy.io.mambo) load_roi_labels() (in module sekupy.io.base) load_subject_file() (in module sekupy.io.subjects) load_subjects() (in module sekupy.io.subjects) load_test_dataset() (in module sekupy.utils) M m() (in module sekupy.analysis.states.metrics) make_dict_product() (in module sekupy.utils) make_dir() (in module sekupy.utils.files) map_transformer() (sekupy.preprocessing.base.Transformer method) MathTransformer (class in sekupy.preprocessing.math) may_contain() (in module sekupy.results.simulations) MemoryReducer (class in sekupy.preprocessing.memory) module sekupy.analysis sekupy.analysis.base sekupy.analysis.connectivity sekupy.analysis.connectivity.base sekupy.analysis.connectivity.meg sekupy.analysis.connectivity.topology sekupy.analysis.decoding sekupy.analysis.decoding.cross_decoding sekupy.analysis.decoding.regression sekupy.analysis.decoding.roi_decoding sekupy.analysis.decoding.temporal_decoding sekupy.analysis.fingerprint sekupy.analysis.fingerprint.fingerprint sekupy.analysis.iterator sekupy.analysis.linear_model sekupy.analysis.pipeline sekupy.analysis.roi sekupy.analysis.rsa sekupy.analysis.rsa.rsa sekupy.analysis.states sekupy.analysis.states.base sekupy.analysis.states.gsbs sekupy.analysis.states.metrics sekupy.analysis.states.subsamplers sekupy.analysis.utils sekupy.ext.nilearn.utils sekupy.ext.sklearn.cluster sekupy.ext.sklearn.feature_selection sekupy.io sekupy.io.base sekupy.io.bids sekupy.io.configuration sekupy.io.connectivity sekupy.io.loader sekupy.io.mambo sekupy.io.subjects sekupy.plot sekupy.plot.connectivity sekupy.plot.nodes sekupy.plot.palette sekupy.plot.rsa sekupy.preprocessing.balancing.base sekupy.preprocessing.balancing.imbalancer sekupy.preprocessing.balancing.utils sekupy.preprocessing.base sekupy.preprocessing.connectivity sekupy.preprocessing.filter sekupy.preprocessing.functions sekupy.preprocessing.mapper sekupy.preprocessing.math sekupy.preprocessing.memory sekupy.preprocessing.normalizers sekupy.preprocessing.pipelines sekupy.preprocessing.regression sekupy.preprocessing.sklearn sekupy.preprocessing.slicers sekupy.results.base sekupy.results.bids sekupy.results.dataframe sekupy.results.simulations sekupy.simulation.autoregressive sekupy.simulation.connectivity sekupy.simulation.kuramoto sekupy.simulation.loader sekupy.utils sekupy.utils.atlas sekupy.utils.bids sekupy.utils.dataset sekupy.utils.files sekupy.utils.image sekupy.utils.math sekupy.utils.matrix sekupy.utils.time N n_triangles() (in module sekupy.analysis.connectivity.topology) negative_correlated() (in module sekupy.ext.sklearn.feature_selection) next() (sekupy.analysis.iterator.AnalysisIterator method) nodes (sekupy.preprocessing.base.PreprocessingPipeline attribute) num (sekupy.analysis.base.Analyzer attribute) O OverSamplingBalancer (class in sekupy.preprocessing.balancing.base) P partial_correlation() (in module sekupy.utils.math) PeakDensityClustering (class in sekupy.ext.sklearn.cluster) pearsonr_score() (in module sekupy.ext.sklearn.feature_selection) PhaseDelayedModel (class in sekupy.simulation.autoregressive) plot_colortable() (in module sekupy.plot.palette) plot_connectivity_lines() (in module sekupy.plot.connectivity) plot_connectivity_matrix() (in module sekupy.plot.connectivity) plot_connectome() (in module sekupy.plot.connectivity) plot_connectomics() (in module sekupy.plot.connectivity) plot_cross_correlation() (in module sekupy.plot.connectivity) plot_dendrogram() (in module sekupy.plot.connectivity) plot_features_distribution() (in module sekupy.plot.connectivity) plot_regression_errors() (in module sekupy.plot.connectivity) plot_within_between_weights() (in module sekupy.plot.connectivity) positive_correlated() (in module sekupy.ext.sklearn.feature_selection) power_transformer() (in module sekupy.io.connectivity) PreprocessingPipeline (class in sekupy.preprocessing.base) purge_dataframe() (in module sekupy.results.simulations) purge_fields() (in module sekupy.results.simulations) Q query_rows() (in module sekupy.results.dataframe) R read_configuration() (in module sekupy.io.configuration) read_json_configuration() (in module sekupy.io.configuration) remove_mean_nifti() (in module sekupy.utils.image) remove_value() (in module sekupy.utils.image) remove_value_nifti() (in module sekupy.utils.image) Resampler (class in sekupy.preprocessing.functions) rgb_to_hex() (in module sekupy.plot.palette) RoiDecoding (class in sekupy.analysis.decoding.roi_decoding), [1] RoiRegression (class in sekupy.analysis.decoding.regression), [1] RSA (class in sekupy.analysis.rsa.rsa) run_analysis() (in module sekupy.analysis) S sample_generator() (in module sekupy.preprocessing.balancing.utils) SampleAttributeTransformer (class in sekupy.preprocessing.functions) SampleAverager (class in sekupy.preprocessing.functions) SampleExpressionSlicer (class in sekupy.preprocessing.slicers) SampleFxNormalizer (class in sekupy.preprocessing.normalizers) SampleResidualTransformer (class in sekupy.preprocessing.regression) SampleSigmaNormalizer (class in sekupy.preprocessing.normalizers) SampleSlicer (class in sekupy.preprocessing.slicers) SampleTransformer (class in sekupy.preprocessing.functions) SampleZNormalizer (class in sekupy.preprocessing.normalizers) SamplingBalancer (class in sekupy.preprocessing.balancing.base) save() (sekupy.analysis.base.Analyzer method) (sekupy.analysis.connectivity.base.Connectivity method) (sekupy.analysis.decoding.Decoding method) (sekupy.analysis.decoding.roi_decoding.RoiDecoding method) (sekupy.analysis.fingerprint.fingerprint.BehaviouralFingerprint method) (sekupy.analysis.fingerprint.fingerprint.Identifiability method) (sekupy.analysis.linear_model.LinearModel method) (sekupy.analysis.pipeline.AnalysisPipeline method) (sekupy.analysis.rsa.rsa.RSA method) (sekupy.analysis.states.base.Clustering method) (sekupy.preprocessing.base.Transformer method) (sekupy.simulation.loader.SimulationLoader method) save_configuration() (in module sekupy.io.configuration) save_map() (in module sekupy.utils.image) save_proximity() (in module sekupy.ext.nilearn.utils) scatter_nodes() (in module sekupy.plot.nodes) ScikitWrapper (class in sekupy.preprocessing.sklearn) scores (sekupy.analysis.decoding.cross_decoding.CrossDecoding attribute) (sekupy.analysis.decoding.Decoding attribute), [1] (sekupy.analysis.decoding.roi_decoding.RoiDecoding attribute), [1] (sekupy.analysis.decoding.temporal_decoding.TemporalDecoding attribute), [1] (sekupy.analysis.rsa.rsa.RSA attribute) (sekupy.analysis.states.base.Clustering attribute) seed_correlation() (in module sekupy.utils.math) sekupy.analysis module sekupy.analysis.base module sekupy.analysis.connectivity module sekupy.analysis.connectivity.base module sekupy.analysis.connectivity.meg module sekupy.analysis.connectivity.topology module sekupy.analysis.decoding module sekupy.analysis.decoding.cross_decoding module sekupy.analysis.decoding.regression module sekupy.analysis.decoding.roi_decoding module sekupy.analysis.decoding.temporal_decoding module sekupy.analysis.fingerprint module sekupy.analysis.fingerprint.fingerprint module sekupy.analysis.iterator module sekupy.analysis.linear_model module sekupy.analysis.pipeline module sekupy.analysis.roi module sekupy.analysis.rsa module sekupy.analysis.rsa.rsa module sekupy.analysis.states module sekupy.analysis.states.base module sekupy.analysis.states.gsbs module sekupy.analysis.states.metrics module sekupy.analysis.states.subsamplers module sekupy.analysis.utils module sekupy.ext.nilearn.utils module sekupy.ext.sklearn.cluster module sekupy.ext.sklearn.feature_selection module sekupy.io module sekupy.io.base module sekupy.io.bids module sekupy.io.configuration module sekupy.io.connectivity module sekupy.io.loader module sekupy.io.mambo module sekupy.io.subjects module sekupy.plot module sekupy.plot.connectivity module sekupy.plot.nodes module sekupy.plot.palette module sekupy.plot.rsa module sekupy.preprocessing.balancing.base module sekupy.preprocessing.balancing.imbalancer module sekupy.preprocessing.balancing.utils module sekupy.preprocessing.base module sekupy.preprocessing.connectivity module sekupy.preprocessing.filter module sekupy.preprocessing.functions module sekupy.preprocessing.mapper module sekupy.preprocessing.math module sekupy.preprocessing.memory module sekupy.preprocessing.normalizers module sekupy.preprocessing.pipelines module sekupy.preprocessing.regression module sekupy.preprocessing.sklearn module sekupy.preprocessing.slicers module sekupy.results.base module sekupy.results.bids module sekupy.results.dataframe module sekupy.results.simulations module sekupy.simulation.autoregressive module sekupy.simulation.connectivity module sekupy.simulation.kuramoto module sekupy.simulation.loader module sekupy.utils module sekupy.utils.atlas module sekupy.utils.bids module sekupy.utils.dataset module sekupy.utils.files module sekupy.utils.image module sekupy.utils.math module sekupy.utils.matrix module sekupy.utils.time module setup_analysis() (in module sekupy.utils) SignTransformer (class in sekupy.preprocessing.math) similiarity() (in module sekupy.utils.math) simulate_dynamics() (sekupy.simulation.connectivity.ConnectivityStateSimulator method) SimulationLoader (class in sekupy.simulation.loader) SimulationModel (class in sekupy.simulation.autoregressive) SingleRowMatrixTransformer (class in sekupy.preprocessing.connectivity) sliced_nodes (sekupy.preprocessing.base.PreprocessingPipeline attribute) SlidingWindowConnectivity (class in sekupy.preprocessing.connectivity) SpeedEstimator (class in sekupy.preprocessing.connectivity) SpeedSubsampler (class in sekupy.analysis.states.subsamplers) StandardPreprocessingPipeline (class in sekupy.preprocessing.pipelines) state_errors() (in module sekupy.results.simulations) Subsampler (class in sekupy.analysis.states.subsamplers) T target_generator() (in module sekupy.preprocessing.balancing.utils) TargetTransformer (class in sekupy.preprocessing.functions) temporal_attribute_reshaping() (in module sekupy.utils.dataset) temporal_transformation() (in module sekupy.utils.dataset) TemporalDecoding (class in sekupy.analysis.decoding.temporal_decoding), [1] TemporalRegression (class in sekupy.analysis.decoding.regression) TemporalTransformer (class in sekupy.preprocessing.functions) time_generator() (in module sekupy.preprocessing.balancing.utils) time_transformer() (in module sekupy.io.connectivity) TimeDelayedModel (class in sekupy.simulation.autoregressive) transform() (sekupy.analysis.rsa.rsa.RSA method) (sekupy.analysis.states.subsamplers.Subsampler method) (sekupy.analysis.states.subsamplers.VarianceSubsampler method) (sekupy.preprocessing.balancing.base.Balancer method) (sekupy.preprocessing.balancing.base.SamplingBalancer method) (sekupy.preprocessing.balancing.imbalancer.Imbalancer method) (sekupy.preprocessing.base.PreprocessingPipeline method) (sekupy.preprocessing.base.Transformer method) (sekupy.preprocessing.connectivity.AverageEstimator method) (sekupy.preprocessing.connectivity.SingleRowMatrixTransformer method) (sekupy.preprocessing.connectivity.SlidingWindowConnectivity method) (sekupy.preprocessing.connectivity.SpeedEstimator method) (sekupy.preprocessing.filter.ButterFilter method) (sekupy.preprocessing.functions.Detrender method) (sekupy.preprocessing.functions.FeatureStacker method) (sekupy.preprocessing.functions.Resampler method) (sekupy.preprocessing.functions.SampleAttributeTransformer method) (sekupy.preprocessing.functions.SampleAverager method) (sekupy.preprocessing.functions.SampleTransformer method) (sekupy.preprocessing.functions.TargetTransformer method) (sekupy.preprocessing.functions.TemporalTransformer method) (sekupy.preprocessing.math.MathTransformer method) (sekupy.preprocessing.memory.MemoryReducer method) (sekupy.preprocessing.normalizers.DatasetFxNormalizer method) (sekupy.preprocessing.normalizers.FeatureAttrNormalizer method) (sekupy.preprocessing.normalizers.FeatureSigmaNormalizer method) (sekupy.preprocessing.normalizers.FeatureZNormalizer method) (sekupy.preprocessing.normalizers.SampleFxNormalizer method) (sekupy.preprocessing.normalizers.SampleSigmaNormalizer method) (sekupy.preprocessing.normalizers.SampleZNormalizer method) (sekupy.preprocessing.regression.FeatureResidualTransformer method) (sekupy.preprocessing.regression.SampleResidualTransformer method) (sekupy.preprocessing.sklearn.ScikitWrapper method) (sekupy.preprocessing.slicers.DatasetMasker method) (sekupy.preprocessing.slicers.FeatureExpressionSlicer method) (sekupy.preprocessing.slicers.FeatureSlicer method) (sekupy.preprocessing.slicers.SampleExpressionSlicer method) (sekupy.preprocessing.slicers.SampleSlicer method) (sekupy.simulation.autoregressive.SimulationModel method) (sekupy.simulation.connectivity.ConnectivityStateSimulator method) Transformer (class in sekupy.preprocessing.base) ttest_values() (in module sekupy.results.base) U UnderSamplingBalancer (class in sekupy.preprocessing.balancing.base) update_attribute() (sekupy.preprocessing.functions.FeatureStacker method) update_ds() (sekupy.preprocessing.connectivity.SlidingWindowConnectivity method) V VarianceSubsampler (class in sekupy.analysis.states.subsamplers) W W() (in module sekupy.analysis.states.metrics) wgss() (in module sekupy.analysis.states.metrics) where_am_i() (in module sekupy.utils.atlas) write_participants_tsv() (in module sekupy.utils.bids) Z z_fisher() (in module sekupy.utils.math) ZFisherTransformer (class in sekupy.preprocessing.math)