Source code for sekupy.analysis

def run_analysis(ds, default_config, default_options=dict(), 
                    name='mvpa', subdir="0_results", kind='combination'):
    """[summary]
    
    Parameters
    ----------
    ds : [type]
        [description]
    default_config : [type]
        [description]
    default_options : [type]
        [description]
    name : [type]
        [description]
    subdir : str, optional
        [description] (the default is "0_results", which [default_description])

    kind : str
        Indicates the type of datum given to options field.
        (values must be 'combination', 'list' or 'configuration')
        if 'combination' all possible combination of items in options will be performed
        as a cartesian product of lists.
        if 'list', elements of dictionary lists must have the same length
        if 'configuration' the elements are single configuration to be used
        'combination' or 'list' or 'configurations'
        see ```sekupy.analysis.iterator.AnalysisIterator``` documentation.

    Returns
    -------
    errs : list
        Returns the list of errors with the configuration that caused the error.
    
    """
    from sekupy.analysis.configurator import AnalysisConfigurator
    from sekupy.analysis.iterator import AnalysisIterator
    from sekupy.analysis.pipeline import AnalysisPipeline

    import gc
    import sentry_sdk
    sentry_sdk.init(
        "https://f2866916959e41bc81abdfaf580f3d26@o252224.ingest.sentry.io/1439199",
        traces_sample_rate=1.0,
    )


    iterator = AnalysisIterator(default_options, 
                                AnalysisConfigurator,
                                kind=kind,
                                config_kwargs=default_config
                                )

    errs = []
    for conf in iterator:
        kwargs = conf._get_kwargs()
        try:
            a = AnalysisPipeline(conf, name=name).fit(ds, **kwargs)
            a.save(subdir=subdir)

            
        except Exception as err:
            errs.append([conf._default_options, err])
            sentry_sdk.capture_exception(err)
            a = 'foo'
        
        del a
        gc.collect()
    
    return errs